PhD opportunities

Information about available funded PhD Positions

EASTBIO - The role of Sox17 in establishing the haematopoietic programme

EASTBIO Project 

Supervisors: Dr Katrin Ottersbach, Dr Abdenour Soufi
Centre/Institute: Centre for Regenerative Medicine, Institute for Regeneration and Repair

About the Project

The definitive haematopoietic system is responsible for ensuring a life-long supply of blood cells that fight infections, guarantee oxygen supply and initiate wound healing. This process is driven from a pool of haematopoietic stem cells (HSCs) that carry significant clinical importance for cell replacement therapies. The first HSCs are generated early in development from specialised, haemogenic endothelial cells (HECs) within the dorsal aorta. HECs are able to initiate a haematopoietic transcriptional programme that drives morphological changes and eventually results in HECs transdifferentiating into HSCs that establish the definitive haematopoietic system. While some of the key drivers of this endothelial-to-haematopoietic transition (EHT) have been identified, how the haematopoietic programme is first initiated in endothelial cells is currently unknown.

Pioneer factors are a subgroup of transcription factors that can bind to closed chromatin and make it accessible for other transcription factors to bind. For this reason, they are essential for cell fate decisions and initiation of new transcriptional programmes. It is highly likely that pioneer factors instigate the EHT; however, their identity has not been established. SOX17 is such a pioneer factor that can bind to condensed chromatin and facilitate the activation of silent genes. This ability is essential for activating linage-specific genes, such as for endoderm and primordial germ cells (PGCs). In addition, it was found to be expressed in HECs and to be required for the earliest steps of the EHT before being turned off at later stages, thus making it a prime candidate for a pioneer factor that makes the haematopoietic programme accessible.

Using an in vitro differentiation system from induced pluripotent stem cells (iPSCs) that can recapitulate the EHT, this project will investigate whether the pioneer factor activity of Sox17 is required to initiate blood generation. Its expression at key stages during the EHT process will be analysed and its ability to bind to key genomic loci will be determined via chromatin immuneprecipitation (ChIP)-sequencing. The chromatin architecture at these loci will be mapped by ATAC-Seq and ChIP-Seq for relevant histone marks, before, during and after the EHT. PSCs deficient for SOX17 will be generated, either through CRISPR/Cas9 or a degron system, and tested for their ability to open up the haematopoietic programme and differentiate into blood cells. The ultimate aim of this project is to dissect the process of blood generation and make it more efficient in vitro so that HSCs can be produced for therapeutic purposes.

 

Apply Now 

EASTBIO Webpage (to download the documents required for email application process, detailed below) 

  • EASTBIO Application
  • Equality, Diversity and Inclusion (EDI) survey
  • Reference Forms can be downloaded via link above

Please send your completed EASTBIO Application Form and EDI survey along with a copy of your academictranscripts to  crm-training@ed.ac.uk before the deadline. You should also ensurethat two references have been sent to crm-training@ed.ac.uk by the deadline using the EASTBIO Reference Form.

The EASTBIO team will run a series of 1-hour online sessions in November/December 2025, open to applicants who have queries about the application process. Please view EASTBIO How to Apply webpage for details. 

Unfortunately due to workload constraints, we cannot consider incomplete applications.

 

Funding Notes

UKRI-funded studentships are open to students worldwide and will cover tuition fees at the UK rate, plus a stipend to support living costs and an annual research grant of £5,000 for the first three years of the PhD research. The proportion of international students appointed through the EASTBIO DTP is capped at 30%. All students must meet the eligibility criteria as outlined in the UKRI guidance on UK, EU and international candidates. This guidance should be read in conjunction with the UKRI Training Grant Terms and Conditions

Documen

 

EASTBIO - Role of biomechanical forces in the embryonic development of haematopoietic stem cells

EASTBIO Project 

Supervisors: Prof Alexander Medvinsky, Dr Guillaume Blin
Centre/Institute: Centre for Regenerative Medicine, Institute for Regeneration and Repair

About the Project

During embryo development haematopoietic stem cells (HSCs) emerge in the AGM region from the endothelial floor of the dorsal aorta through the process called endothelial-to-haematopoietic transition (EHT). During this time the embryo undergoes active morphogenetic transformations including curving. Physical strains generated during embryo curving may trigger mechanosensing mechanisms leading to spatial polarisation of molecular signalling supporting HSC development.

The goal of the project is to explore relationships between mechanical forces and polarised molecular signalling in the AGM region. To this end, the student will map physical strains in the AGM region and conduct spatial transcriptomics using confocal imaging and computational analysis. Additionally, mechanical perturbations will be used to validate observations and conclusions arising from the aforementioned computational analysis. Particular focus will be on cytoskeleton, cell adhesion, extra-cellular matrix and mechanosignalling pathways. This multidisciplinary project is an integral part of a broader highly collaborative programme on developmental haematopoiesis ongoing in the laboratory.  

 

Apply Now 

EASTBIO Webpage (to download the documents required for email application process, detailed below) 

  • EASTBIO Application
  • Equality, Diversity and Inclusion (EDI) survey
  • Reference Forms can be downloaded via link above

Please send your completed EASTBIO Application Form and EDI survey along with a copy of your academictranscripts to  crm-training@ed.ac.uk before the deadline. You should also ensurethat two references have been sent to crm-training@ed.ac.uk by the deadline using the EASTBIO Reference Form.

The EASTBIO team will run a series of 1-hour online sessions in November/December 2025, open to applicants who have queries about the application process. Please view EASTBIO How to Apply webpage for details. 

Unfortunately due to workload constraints, we cannot consider incomplete applications.

 

Funding Notes

UKRI-funded studentships are open to students worldwide and will cover tuition fees at the UK rate, plus a stipend to support living costs and an annual research grant of £5,000 for the first three years of the PhD research. The proportion of international students appointed through the EASTBIO DTP is capped at 30%. All students must meet the eligibility criteria as outlined in the UKRI guidance on UK, EU and international candidates. This guidance should be read in conjunction with the UKRI Training Grant Terms and Conditions

Documen

 

Analysis of biomarkers correlating with umbilical cord blood transplantation outcome

Precision Medicine Project - Analysis of biomarkers correlating with umbilical cord blood transplantation outcome

Supervisor(s): Prof Alexander Medvinsky, Dr Andrejs Ivanovs, Dr Carsten Marr (Hemholtz Munich) & Prof Claudio Angione (Alan Turing Institute)
Centre/Institute: Centre for Regenerative Medicine, Institute for Regeneration and Repair

Background

Haematopoietic cell transplant (HCT) is a life-saving therapy for patients with haematological disorders. Umbilical cord blood (UCB) is a clinically accepted source of therapeutic cells and is a vital resource when HLA matched unrelated adult donors are in limited supply. Some UCB, however, show delayed haematopoietic reconstitution and biased lineage differentiation, which needs to be addressed to fully unlock this valuable resource stored in large numbers around the world in stem cells banks. Our preliminary xenograft transplantation analysis revealed UCB molecular traits that can serve as complementary selection criteria to identify UCBs with superior haematopoietic reconstitution capacity. An awarded MRC DPFS grant allowed us to compose a consortium aiming to generate a robust molecular biomarker-based test system for identification of optimal UCB samples for clinical transplantations. 

The proposed PhD project is closely associated with the aforementioned MRC DPFS project and aims to discover additional morphological traits. The methodology is based on the AI image-based analysis of UCB cells transplanted into immunocompromised NSG mice. This project will be conducted in the highly interactive environment of Medvinsky’s laboratory (University of Edinburgh) who are experts in mouse and human haematopoietic stem cell biology, and xenotransplantation into NSG recipients. The study will be co-supervised by experts in machine learning and clinical haematology.

Aims

  1. Classification of umbilical cord blood (UCB) samples by the transplantation outcome.
  2. Identification of morphological traits in UCB samples correlating with the transplantation outcomes.
  3. Determine how in vivo UCB transplantation outcomes correlate with in vitro differentiation. 

Training outcomes

The student will acquire expertise in:

  1. Multi-lineage analysis of blood samples using flow cytometry and blood smears.
  2. In vitro differentiation myeloid and lymphoid assays.
  3. Expertise in machine learning.

Apply Now

Click here to Apply Now

  • The deadline for 26/27 applications is Monday 12th January 2026
  • Applicants must apply to a specific project. Please ensure you include details of the project on the Recruitment Form below, which you must submit to the research proposal section of your EUCLID application.
  • Please ensure you upload as many of the requested documents as possible, including a CV, at the time of submitting your EUCLID application.  
Document

Q&A Sessions

Supervisor(s) of each project will be holding a 30 minute Q&A session in the first two weeks of December. 

If you have any questions regarding this project, you are invited to attend the session on Wednesday 3rd December at 3pm GMT via Microsoft Teams. Click here to join the session.

Documen

 

Testing and understanding potential drugs of benefit to cerebral small vessel disease in a rat model

Applications accepted up till Friday 12th December 2025.  Directly funded PhD Project. 

Supervisors: Prof Anna Williams (University of Edinburgh), Prof Malcolm Macleod (University of Edinburgh), Prof Joanna Wardlaw (University of Edinburgh)

Race Against Dementia: All Hands Team Vascular

Vascular causes of dementia are common. Cerebral small vessel disease (cSVD) is the leading cause of vascular cognitive impairment (VCI) and vascular dementia (VaD) including in mixed dementias with Alzheimer’s disease. Despite causing up to 45% of dementias, research and established treatments for vascular causes of dementia are lacking. Race Against Dementia (RAD): Team Vascular - Prevention and Treatment of Vascular Cognitive Impairment and Dementia is a cross-disciplinary team working together to prevent and treat vascular causes of cognitive impairment and dementia, with expertise in cSVD, Alzheimer’s disease and dementia, clinical research including trials, discovery science, and data science including experimental validity, literature and drug data interrogation. The Team comprises four interconnected workstreams: LACI-Cog, a pilot trial in patients with cognitive decline; LACI-Rat, conducting randomised trials in preclinical rodent models; LACI-Hunt, to develop efficient methods of searching for new drug targets and drugs; and LACI-Ignite, to advocate for the importance of vascular causes of dementia, foster awareness, and promote interest amongst early career and senior researchers, funders and policy-makers.

PhD studentships

This is one of three RAD Team Vascular PhDs. In these three-year PhDs, students will work in a multidisciplinary environment and receive specific training in cerebrovascular disease including vascular causes of dementia via local, national and international research collaborations and general training via the Postgraduate Office. The training is designed to ensure students gain a broad range of skills that will enhance their employability and ensure they can become future leaders in research.

Supervisors and Environment

All supervisors are experienced researchers, bring complementary skills to tackle vascular causes of cognitive decline and dementia, and world leading in their respective topics. They are all trained in PhD regulations, Equality & Diversity and Unconscious Bias, student mentoring and training, and are approved by the UoE to be a supervisor.

Background:

We created and characterized the Atp11b-knockout (KO) transgenic rat which shows pathological imaging and behavioural characteristics similar to those found in human cerebral small vessel disease (SVD) in spite of being normotensive. This rat first shows endothelial cell dysfunction followed by white matter changes in the brain, with cognitive and mobility decline.  We have shown that these detrimental changes can be ameliorated using a variety of different drugs with actions on endothelial cells.

As part of LACI-rat, the student will use this rat model both to test other potential drugs of benefit, with readouts of pathology and behaviour, as well as seeking to understand how these drugs are having their effect – on endothelial cells and other brain cells. The student will work closely with the LACI-Hunt team who are using systemic literature searches and machine learning paradigms to identify potential drugs to test.

Aims:

  1. To test the multiple drugs identified through LACI-Hunt that may benefit SVD in vitro on dysfunctional (Atp11bKO endothelial cells) to determine if they reverse endothelial cell dysfunction. This will provide information about the mechanism of action of these drugs as well as providing a prioritisation step for moving into in vivo studies.
  2. To test selected drugs identified through LACI-Hunt for their action on other relevant Atp11bKO brain cells (e.g. oligodendrocytes, microglia) to identify those with beneficial effects e.g. increasing oligodendrocyte myelin production, reducing disease-associated microglial signatures as appropriate for the drug class. Again, this will provide information about the mechanism of action of these drugs, potential added benefit/side effects and further providing a prioritisation step for moving into in vivo studies.
  3. To test the prioritised drugs in vivo in an established Rat trial protocol (LACI-Rat) to determine whether they can prevent (at early time-points) or reverse (at later time-points) SVD-like pathology, as well as deterioriation in mobility and cognition.

Training outcomes:

  • Primary cell culture, drug dose responses, immunofluorescence, western blotting, QPCR, functional assays, microscopy, image analysis, statistics
  • Rat handling, blood pressure measurement, behavioural tests, confocal microscopy, electron microscopy, image analysis, statistics
  • Interdisciplinary working
  • Public engagement

Please submit a resume including a:

  • Cover letter summarizing your motivation for undertaking this PhD, what you would bring to the project and Team as a whole, names and contact details of two referees, and when you would be able to start the PhD;
  • CV summarizing your training, degrees and qualifications, research and work experience to date, publications and presentations;
  • Statement on UK citizenship status, including whether you have the right to study in the UK or not.

Student Requirements

The successful candidate is likely to have a 1st or 2:1 honours degree in one of the biological sciences. Prior experience in handling rodents would be an advantage. An MSc in a related discipline would also be an advantage but is not essential.

Submit your application to ccbs-phd@ed.ac.uk before Friday 12th December 2025. Interviews will be held January 2026.

Funding Notes

The successful applicant will be awarded a Race Against Dementia (RAD) UK funded PhD studentship for three years, which includes their stipend at the UKRI rate and tuition fees. Fee waivers for international students are under consideration, international students are advised to apply early and inquire about potential funding options and eligibility criteria.

References

Quick S, Procter TV, Moss J, Seeker L, Walton M, Lawson A, Baker S, Beletski A, Garcia DJ, Mohammad M, Mungall W, Onishi A, Tobola Z, Stringer M, Jansen MA, Vallatos A, Giarratano Y, Bernabeu MO, Wardlaw JM, Williams A. Loss of the heterogeneous expression of flippase ATP11B leads to cerebral small vessel disease in a normotensive rat model. Acta Neuropathol. 2022 Aug;144(2):283-303. doi: 10.1007/s00401-022-02441-4. Epub 2022 May 30. PMID: 35635573; PMCID: PMC9288385.
Rajani RM, Quick S, Ruigrok SR, Graham D, Harris SE, Verhaaren BFJ, Fornage M, Seshadri S, Atanur SS, Dominiczak AF, Smith C, Wardlaw JM, Williams A. Reversal of endothelial dysfunction reduces white matter vulnerability in cerebral small vessel disease in rats. Sci Transl Med. 2018 Jul 4;10(448):eaam9507. doi: 10.1126/scitranslmed.aam9507. PMID: 29973407.
Documen
HTML

MSc By Research: Regenerative Medicine and Tissue Repair Programme

Our MSc by Research in Regenerative Medicine and Tissue Repair is a one-year, full-time, on-campus Masters programme structured around two laboratory-based research projects and a research proposal writing component.

The programme is based at the Institute for Regeneration and Repair (IRR), a purpose-built research environment at the heart of Edinburgh BioQuarter, with a track record in training over 180 postgraduate students.

This MSc by Research is designed to prepare you for a research career in academia or industry, whether you have recently completed an undergraduate degree or are a professional who wants to pursue a career in research. You will gain valuable transferable skills that will be beneficial in a wide range of professions.

MSc By Research: Regenerative Medicine and Tissue Repair website

PhD Opportunities

PhD Students

If you are looking to join CRM as a PhD student, keep an eye on the FindaPhD website, where all studentships will be advertised.

Search for studendships on FindaPhD.com

Postdoctoral Research

To find a postdoc position, refer to the University of Edinburgh job search page,  where any postdoc/PDRA posts will be advertised. 

Search jobs

Self Funded Applicants

We encourage inquiries and applications from self-funded basic and clinical scientists and from candidates who intend to apply for external funding all year round.

Instructions on how to apply as a self funded student

Studentships can include:

  • Stipend for 3 or 4 years
  • Tuition Fees
  • Research Training Costs
  • Conference Travel Allowance

Please contact relevant principal investigators informally to discuss potential projects and visit our funding opportunities page.

Information and contacts for principal investigators

PhD funding and finance

Contact us for more information